Severe Impact Of Avian Flu On Southern Elephant Seals

British Antarctic Survey

New research reveals 47% decline in breeding female elephant seals at sub-Antarctic island of South Georgia following a highly pathogenic avian influenza outbreak.

Scientists from the British Antarctic Survey (BAS) have documented the severe impact of highly pathogenic avian influenza (HPAI) on southern elephant seals at South Georgia, revealing a 47% decline in breeding females between 2022 and 2024.

A group of elephant seals on the shore in the foreground and the sea in the background
Elephant seals on Lagoon Island near Ryder Bay, Adelaide Island. Credit: Steve Gibbs, BAS

The research, published today in the journal Communications Biology, shows that the world's largest population of southern elephant seals - which accounts for over half of the global population of breeding age - has suffered unprecedented losses following the arrival of HPAI H5N1 at the remote sub-Antarctic island in late 2023.

Using cutting-edge aerial survey technology, the research team monitored the three largest breeding colonies on South Georgia (representing 16% of the total female breeding population, based on census data from 1995), comparing breeding female numbers before and after the virus outbreak. Their findings reveal an average reduction of 47% in females, with some colonies experiencing declines of over 60%.

Dr Connor Bamford, seal ecologist and lead author from BAS, said:

"The scale of this decline is truly shocking. In typical years, we might see variations of around 3-7% between years, but to see nearly half of the breeding population absent is unprecedented. This represents approximately 53,000 missing females across the entire South Georgia population."

Drone shot of elephant seals from above
Scientists from the British Antarctic Survey (BAS) have documented the severe impact of highly pathogenic avian influenza (HPAI) on southern elephant seals at South Georgia. Connor Bamford, BAS

Southern elephant seals are one of the most iconic species in Antarctica, with adults capable of diving to depths of over 1,500 metres and travelling thousands of kilometres to feed, across the entire Southern Ocean. The remote islands of South Georgia have been home to a stable population for decades.

The virus first appeared at South Georgia in September 2023, initially detected in brown skuas before spreading to marine mammals including elephant seals and Antarctic fur seals.

Dr Bamford added:

"What makes this particularly concerning is that southern elephant seals are long-lived animals. Even short-term drops in reproductive output or mortality in the breeding population will have long-term impacts on population stability. The ramifications of this outbreak will likely be felt for many years to come."

The research team used fixed-wing UAVs to conduct precise aerial surveys, creating detailed maps of the breeding colonies and enabling accurate counts of individual seals. This technology allowed scientists to assess the impact of HPAI with unprecedented precision despite the remote and challenging conditions.

The findings mirror drastic declines observed in South American elephant seal populations, where HPAI caused mortality rates of over 70% in some areas. However, the South Georgia population had previously been considered stable and isolated from such threats.

A male and female elephant seal in the foreground and sea and ice in the background
Male (left) and female (right) southern elephant seals on Rothera Point, Antarctica. Credit: Constantino Listowski, BAS

Sue Gregory, Senior Marine and Fisheries Manager at the Government of South Georgia and the South Sandwich Islands (GSGSSI) said:

"Having seen the impact of HPAI on elephant seal populations in South America, GSGSSI were braced for seeing similar consequences on our beaches. This study provides a valuable contribution to ongoing monitoring of the population dynamics of our higher predators and research into the regional variation in their response to differing environmental pressures."

Jamie Coleman, ecologist and co-author from BAS, said:

"Using this technology enabled us to survey three of the largest elephant seal colonies in the world in a matter of minutes. We used to do this counting on foot so UAVs are enabling us to count large animal populations quickly. In between rain, snow and gale-force winds, we were able to collect critical data that can be used to understand how these incredible animals are being impacted by their changing environment."

The research highlights the critical importance of continuing the sustained, long-term monitoring led by British Antarctic Survey since 2015, which has integrated ground counts, drone surveys and satellite imagery to assess the full extent of the damage and track potential recovery. These baseline data enable researchers to distinguish short-term fluctuations from enduring population-level impacts.

The study was funded by a Biodiversity Challenge Fund Darwin Plus grant (DPLUS214) and conducted under permits from the Government of South Georgia and the South Sandwich Islands.

Highly Pathogenic Avian Influenza Viruses (HPAIV) associated with major southern elephant seal decline at South Georgia by Connor Bamford et al is published in Communications Biology.

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