Researchers at Karolinska Institutet have identified small molecules capable of influencing a hard-to-target receptor family linked to cancer development. The findings have been published in Nature Communications and the Journal of Biological Chemistry.
The human body contains thousands of proteins that act as receivers of various signals. One particular group, the Frizzled receptors, enables cells to communicate and plays a crucial role in tissue growth and repair. However, when these receptors become overactive, they may contribute to the development of cancer. Researchers have therefore long sought ways to modulate them pharmacologically - an endeavour that has proven highly challenging. Researchers at Karolinska Institutet have now investigated Frizzled 7 (FZD7), a receptor essential for intestinal cells and frequently overactive in tumours. By combining large-scale virtual compound libraries, in silico screening and computer simulations with laboratory assays and cryogenic electron microscopy (CryoEM), the team has identified and characterised small molecules that can reduce receptor activity.
One such molecule, known as C407, binds to a pocket within the receptor and prevents it from changing shape as it normally does when activated by its natural signals, the WNT proteins.
'Using computational screening methods as a starting point enabled us to screen a huge number of molecules and to overcome the difficulty that we were not sure where a suitable binding site for drug-like compounds targeting FZDs was,' says Magdalena Scharf
These types of molecules are known as negative allosteric modulators. This means that they do not block the conventional binding site; instead, they affect the receptor at a different location, reducing its activity.
'We demonstrate for the first time that the internal pocket of Frizzled receptors is accessible to small molecules, and that this can be used to modulate their function,' says Gunnar Schulte , Professor at Karolinska Institutet.
He emphasises that this is an early stage:
'These molecules are not yet ready to be developed as drugs, but they open up new possibilities for treating cancer and other diseases involving disturbances in this signalling pathway. Our studies also provide clear proof-of-concept showing that FZD activation can indeed be reduced in this way - a breakthrough for the field.'
The research is a collaboration between Karolinska Institutet, SciLifeLab, NAISS, KTH and partners in Germany, and has been funded by, among others, the Swedish Research Council, the Swedish Cancer Society, SSMF and the Novo Nordisk Foundation.
Please refer to the individual studies for disclosures of potential conflicts of interest.
Nature Communications
In silico docking yields small molecule negative allosteric modulators targeting the core of Frizzled 7.
Scharf MM, Kinsolving J#, Grätz L#, Voss JH, Carrasco-Busturia D, Forsberg B, Kolb P, Schulte G. Nature Communications. 2025 - in press.
Journal of Biological Chemistry
SAG1.3-derived Frizzled-targeting small-molecule compounds.
Grätz L#, Turku A#, Kozielewicz P, Bowin CF, Scharf MM, Voss JH, Kinsolving J, Shekhani R, Oliva-Vilarnau N, Koolmeister T, Körber M, Lauschke VM, Löber S, Gmeiner P, Schulte G. J Biol Chem. 2025;301(11):110751. doi: 10.1016/j.jbc.2025.110751. PMID: 40992662.
